Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs16986825 chr22:29300306 C/T 1.32E-5 174 25.77 24.03 28.6 KM Plot
PCPG rs16991288 chr22:44384881 G/C 8.94E-5 175 24.6 27.47 19.87 KM Plot
PCPG rs17002510 chr22:42002957 A/G 0.000232 178 NA 20.37 26.57 KM Plot
PCPG rs17007164 chr2:61452502 A/G 6.95E-5 177 23.43 30.93 10.3 KM Plot
PCPG rs17007356 chr2:61465504 A/C 2.72E-5 178 23.15 30.18 23.77 KM Plot
PCPG rs17008097 chr2:61523070 C/G 0.000486 178 21.95 30.63 17.85 KM Plot
PCPG rs17008217 chr2:61537167 G/C 6.43E-5 178 23.43 29.88 10.3 KM Plot
PCPG rs17039811 chr2:61540478 T/C 6.95E-5 177 23.43 29.43 10.3 KM Plot
PCPG rs17047421 chr2:118555719 T/A 1.89E-5 176 25.17 25.97 11.65 KM Plot
PCPG rs17047429 chr2:118557083 T/C 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs17047434 chr2:118558995 G/T 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs17047438 chr2:118569406 C/T 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs17047457 chr2:118583249 G/A 1.92E-5 176 25.17 25.97 11.65 KM Plot
PCPG rs17047460 chr2:118584741 T/C 1.92E-5 176 25.17 25.97 11.65 KM Plot
PCPG rs17047593 chr2:118723032 T/C 1.6E-5 178 25.17 30.93 11.65 KM Plot